Type of Protein and Its Functions

Proteins are long chains of amino acids that form a molecular chain. In this blog post, we will look at the different types of proteins and their functions along with how they can be classified into groups.

The main function of all proteins is to build tissues in our body by binding cells together through its peptide bonds

Proteins have four levels where it can exist: primary, secondary, tertiary and quaternary structure . Primary Structure refers to the order/ sequence of amino acid residues within a polypeptide backbone while Secondary Structure involves hydrogen bonding between atoms which causes folding or bending such as Alpha Helix or Beta Strand formation . Tertiary structure describes proteins' three dimensional shape while Quaternary structure pertains to the formation of complexes between two or more polypeptide chains.

Classes of Proteins

There are five main classes of proteins which can be classified according to their function: Enzymes, Structural Proteins, Transport Proteins, Regulatory Proteins and Hormones. The following is a brief description of each type:

• Enzyme proteins catalyse biochemical reactions in the body while some inhibitors stop these enzymes from working.

• Structural proteins provide support for cells and tissues while also aiding in movement.

• Transport proteins move molecules across cell membranes such as ions, nutrients and waste products.

• Regulatory proteins control cellular processes by turning genes on or off.

• Hormones act as chemical messengers to communicate between cells.

Importance of Studying Proteins:

Proteins play a vital role in many biological processes and are essential for the body to function properly. By understanding their structure and function, we can gain insight into how they work together to carry out various tasks. This knowledge can be used to develop treatments for diseases or create new drugs that target specific proteins.

Here are Some Best Ways to Study Proteins:

1. Online resources provide an easy and convenient way to learn about proteins. Simply typing in 'how do proteins work', you will get a plethora of articles that describe their functions, structure and interactions with other molecules.

2. There are also several apps which can be downloaded onto your phone or tablet for free such as the ‘Proteins Database’ by Hao Wang from Yale University . This app presents users with information on more than 250 different types of proteins.

3. Learn the basics- It is important to have a thorough understanding of the basics before you delve into more complex concepts.

4. Taking an online course can be helpful in this regard, especially if it is available for free . Coursera offers numerous courses by universities that have partnered with them which include ‘Cell and Molecular Biology’ from Yale University or 'Bioinformatics: Life Sciences' offered by Johns Hopkins University.

5. Look up specific amino acids- Amino Acid databases such as Expasy's Peptide Atlas provides information on individual residues such as their three dimensional structure (Cartesian Coordinates), chemical properties (e.g., molecular weight) and other physical data along with protein complexes they are involved in . This will help identify patterns within proteins to find regions/ motifs which are important for their function.

6. Protein Databases

Once you have a general understanding of proteins, you can then delve into more specific databases that focus on particular proteins or protein families. The two main databases are the Protein Data Bank (PDB) and the National Centre for Biotechnology Information (NCBI). The PDB is curated by the Research Collaboratory for Structural Bioinformatics and contains over 114,000 entries from experimentally determined structures of proteins, nucleic acids and complex assemblies while NCBI houses over 26 million sequences including genes, transcripts, proteins and peptides .

7. Blast Searching 

The most common way to search for information in these databases is through blast searching. This allows you to input a protein sequence and will return all the relevant information from the database related to that sequence.

8. Structural Homology 

Proteins can be classified into families based on their structural homology. This is determined by comparing the amino acid sequences of two or more proteins and looking for regions that are conserved (i.e., have not changed much over time). This allows researchers to identify new proteins, as well as understand how they function and interact with other molecules .

9. Domain Analysis 

Another way to study proteins is through domain analysis. This approach looks at individual domains within a protein and determines their function. By understanding the role of each domain, we can get a better idea of how the protein works as a whole .

10.  Protein Interactions 

As proteins are composed of multiple domains, it is important to understand how they interact with one another. This can be done through protein-protein docking simulations which use mathematical models to predict the likely interactions between two or more proteins. These simulations can help identify potential drug targets as well as how best to disrupt those interactions .